EDEN by Basecamp Research agent skills for Claude Code, Cursor and RevampKey

3 ready-made playbooks that teach an AI agent how to do real EDEN by Basecamp Research work: which tools to call, what to check first, and when to stop and ask you.

Download RevampKey, free I have it: connect EDEN by Basecamp Research

Connect EDEN by Basecamp Research once and all 3 skills install themselves and stay up to date. Mac, Windows and Linux.

All 3 EDEN by Basecamp Research skills

Each skill is one job. You ask in plain words and the agent loads the skill that matches, then follows its steps.

Start hereAsks before writing6 EDEN by Basecamp Research tools

Use EDEN by Basecamp Research with AI

Connects your EDEN account and works through datasets and predictive tools, confirming the account first and asking before any upload or deletion.

Use it when

You want to see which biological datasets your EDEN account can access
You need to upload a dataset to EDEN without risking the wrong workspace
You want to run peptide or immunogenicity predictions with EDEN

Tools it uses

list_datasets
create_dataset_download
create_dataset_upload
delete_dataset
generate_antimicrobial_peptides
predict_immunogenicity

Example

List my EDEN datasets and tell me which ones look unused, but don't delete anything yet.

Your session can see 12 datasets. Three have had no recent activity: 'ecoli_pilot_v2', 'peptide_scan_march' and 'legacy_mhc_set'. I haven't deleted anything. Tell me which of these you want removed and I'll confirm each one with you before I act.

Use in RevampKeyRead the full skill →

Read-only2 EDEN by Basecamp Research tools

Screen antimicrobial peptide candidates with EDEN

Generates antimicrobial peptide candidates and runs immunogenicity prediction on them, then ranks and shortlists by score and sequence plausibility. It asks before generating anything new.

Use it when

You want a shortlist of antimicrobial peptide candidates for a target pathogen
You need candidates ranked for lower predicted immunogenicity
You want sequences checked for length, charge and near-duplicates before lab work

Tools it uses

generate_antimicrobial_peptides
predict_immunogenicity

Example

Generate 50 antimicrobial peptides, 12 to 25 residues, for Gram-negative bacteria, and shortlist the 5 least immunogenic ones.

Here is the brief I'll run: target Gram-negative bacteria, 12 to 25 residues, 50 generated, 5 shortlisted. Generation creates new records, so please confirm before I start. After the run, 41 candidates were rejected for length or charge, 4 near-duplicates were merged, and the 5 remaining candidates form the shortlist ranked by predicted immunogenicity. These are computational filters only, not evidence of activity or safety.

Use in RevampKeyRead the full skill →

Asks before writing2 EDEN by Basecamp Research tools

Check and upload a dataset to EDEN

Checks a biological dataset for format, duplicate identifiers, missing values and sequence validity before anything is sent to EDEN. It confirms the destination and asks for your approval before uploading.

Use it when

Before submitting a new dataset to EDEN
When a file import keeps failing or looks wrong
When you need to confirm the right account before uploading

Tools it uses

create_dataset_upload
list_datasets

Example

Check my peptide assay CSV and upload it to EDEN as a new dataset if it looks clean.

I checked the file: 1,240 rows and 9 columns. I found 6 duplicate sample IDs and 18 blank concentration values. Sequences contain 3 lowercase entries, which I have flagged. The name does not clash with an existing dataset. Shall I upload once you have decided how to handle the duplicates?

Use in RevampKeyRead the full skill →

Get all 3 without copying a file

RevampKey adds the skills when you connect EDEN by Basecamp Research, updates them for you and removes them when you disconnect.

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How EDEN by Basecamp Research skills work

Connect EDEN by Basecamp Research
The EDEN by Basecamp Research MCP server gives the agent its tools.
Ask in plain words
“Generate 50 antimicrobial peptides, 12 to 25 residues, for Gram-negative bacteria, and shortlist the 5 least immunogenic ones.” Each SKILL.md says when it applies, so only the one that fits is loaded.
Approve any change
The agent calls the tools in order, checks its work, and shows you any change before it makes it.

How to install EDEN by Basecamp Research skills

In RevampKey the skills install themselves when you connect EDEN by Basecamp Research. In other tools each skill is one folder with a SKILL.md file, and you also need the EDEN by Basecamp Research MCP server connected there.

About 1 minute · nothing to copy

Download RevampKey for Mac, Windows or Linux and sign in.
Open Connectors and connect EDEN by Basecamp Research. All 3 skills come with it and stay up to date; they go away when you remove the connector.
Ask in plain language, for example “Generate 50 antimicrobial peptides, 12 to 25 residues, for Gram-negative bacteria, and shortlist the 5 least immunogenic ones.”
Download RevampKeyConnect EDEN by Basecamp Research · 1 click
Get RevampKey to connect EDEN by Basecamp Research
RevampKey is a free desktop app for Mac, Windows and Linux. Install it, sign in, and EDEN by Basecamp Research is one click away with its skills already attached.
Download RevampKey
Not now? Use the skills in your current tool
for s in essentials antimicrobial-peptide-candidate-screening dataset-upload-and-validation; do curl -fsSL --create-dirs -o .claude/skills/eden-basecamp-research-$s/SKILL.md https://revampkey.com/marketplace/eden-basecamp-research/skills/$s/SKILL.md done
Other tools

Into this project’s .claude/skills folder

Connect the EDEN by Basecamp Research MCP server in Claude Code.

Run this in your project folder to add all 3 skills:

for s in essentials antimicrobial-peptide-candidate-screening dataset-upload-and-validation; do
  curl -fsSL --create-dirs -o .claude/skills/eden-basecamp-research-$s/SKILL.md https://revampkey.com/marketplace/eden-basecamp-research/skills/$s/SKILL.md
done

Ask in plain language, for example “Generate 50 antimicrobial peptides, 12 to 25 residues, for Gram-negative bacteria, and shortlist the 5 least immunogenic ones.”

Into the shared .agents/skills folder

Connect the EDEN by Basecamp Research MCP server in Cursor.

Run this in your project folder to add all 3 skills:

for s in essentials antimicrobial-peptide-candidate-screening dataset-upload-and-validation; do
  curl -fsSL --create-dirs -o .agents/skills/eden-basecamp-research-$s/SKILL.md https://revampkey.com/marketplace/eden-basecamp-research/skills/$s/SKILL.md
done

Ask in plain language, for example “Generate 50 antimicrobial peptides, 12 to 25 residues, for Gram-negative bacteria, and shortlist the 5 least immunogenic ones.”

Into the shared .agents/skills folder

Connect the EDEN by Basecamp Research MCP server in Codex.

Run this in your project folder to add all 3 skills:

for s in essentials antimicrobial-peptide-candidate-screening dataset-upload-and-validation; do
  curl -fsSL --create-dirs -o .agents/skills/eden-basecamp-research-$s/SKILL.md https://revampkey.com/marketplace/eden-basecamp-research/skills/$s/SKILL.md
done

Ask in plain language, for example “Generate 50 antimicrobial peptides, 12 to 25 residues, for Gram-negative bacteria, and shortlist the 5 least immunogenic ones.”

Into the shared .agents/skills folder

Connect the EDEN by Basecamp Research MCP server in VS Code.

Run this in your project folder to add all 3 skills:

for s in essentials antimicrobial-peptide-candidate-screening dataset-upload-and-validation; do
  curl -fsSL --create-dirs -o .agents/skills/eden-basecamp-research-$s/SKILL.md https://revampkey.com/marketplace/eden-basecamp-research/skills/$s/SKILL.md
done

Ask in plain language, for example “Generate 50 antimicrobial peptides, 12 to 25 residues, for Gram-negative bacteria, and shortlist the 5 least immunogenic ones.”

RevampKey or copy the files?

In RevampKey

One click when you connect EDEN by Basecamp Research
Updated for you when a skill improves
Removed when you disconnect
The MCP server is set up for you
800+ other connectors, same way

Download free

Copy into your project

One command per project
Run it again to get updates
You connect the EDEN by Basecamp Research MCP server yourself
Works in Claude Code, Cursor, Codex and VS Code

See the command

EDEN by Basecamp Research skills FAQ

What is a EDEN by Basecamp Research agent skill?

A SKILL.md file: a short playbook an AI agent loads when your request matches it. Each EDEN by Basecamp Research skill describes one job, which EDEN by Basecamp Research tools to use in which order, what to check first and when to stop and ask you.

Do the EDEN by Basecamp Research skills change anything on their own?

1 of the 3 only read. The others tell the agent to show you the change and wait for a yes before it creates, edits or deletes anything in EDEN by Basecamp Research.

Which tools can use these skills?

Any agent that reads the open Agent Skills format: Claude Code, Cursor, Codex, VS Code with Copilot and RevampKey. In RevampKey they are attached when you connect EDEN by Basecamp Research; elsewhere you copy the folders into your project or skills directory.

Do I need the EDEN by Basecamp Research MCP server too?

Yes. The skills tell the agent how to do the work; the EDEN by Basecamp Research MCP server gives it the tools to do it. The EDEN by Basecamp Research MCP setup guide covers every client.

EDEN by Basecamp Research MCP server setup · This page as Markdown

Put EDEN by Basecamp Research’s best workflows in your agent

Download RevampKey, connect EDEN by Basecamp Research and ask your first question in about a minute.

Download RevampKey Connect EDEN by Basecamp Research · 1 click

All 3 EDEN by Basecamp Research skills

Use EDEN by Basecamp Research with AI

Use it when

Tools it uses

Screen antimicrobial peptide candidates with EDEN

Use it when

Tools it uses

Check and upload a dataset to EDEN

Use it when

Tools it uses

Get all 3 without copying a file

How EDEN by Basecamp Research skills work

How to install EDEN by Basecamp Research skills

RevampKey or copy the files?

In RevampKey

Copy into your project

EDEN by Basecamp Research skills FAQ

Put EDEN by Basecamp Research’s best workflows in your agent

Skills for related tools